PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003979-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 366aa    MW: 40390.2 Da    PI: 7.4225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003979-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09178225455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  NNU_003979-RA 178 SHSLAERVRREKISERMKMLQGLVPGC----DKITGKAHMLDEIINYVRSLQ 225
                    8*************************9....899*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.00E-10172229No hitNo description
SuperFamilySSF474593.93E-16172238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.389174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16174235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-7178225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-9180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAAFSYQQPT FLLDSAMLPN SPVKMPGLFE FGLGLGLGDI NATCFPYFPP QPLPESSIDN  60
LDTSKNVILS DNEPSMTQKQ RSYSSSLVVG LESGDQVTQD ETQKMDKRKK KKNGDGSCSN  120
FAESSKDVRE GKSKRQRKCS SASKDAEEDK RRADKKVGEE APTGYIHVRA RRGQATDSHS  180
LAERVRREKI SERMKMLQGL VPGCDKITGK AHMLDEIINY VRSLQSQVEF LSMKLASASP  240
IFYDFGADLD ASLPKPPVNL APPPTTQSTQ ASCASEPTAF MDSTTSFSTR NNYPILDSSI  300
AAGFLEQGQR PNADAFPQKN GNLLWDVENQ IRSFNHQSNF NTFCSFQATA VTLEERHTTS  360
KLSAAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136KSKRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250560.10.0PREDICTED: transcription factor bHLH137-like isoform X1
TrEMBLD7SH591e-102D7SH59_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g00430.t011e-102(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-55bHLH family protein